PANGAIA

Pangenome Graph Algorithms and Data Integration

The PANGAIA project


PANGAIA is a EU funded project for filling the gap between the rapidly increasing power of DNA sequencing technologies and the current limitations in resolving the inherent complexity of the forthcoming volumes of data.
The leitmotif is to train young researchers in the area of computational pangenomics, while laying the computational foundations for personalized medicine.

Developing new techniques

Design and implementation of new techniques for constructing, managing, and analyzing pangenomes.

Share knowledge

Share knowledge and expertise with partner organizations. A key factor is the involvement of partners from non-EU countries such as Japan, Canada, and the US.
Furthermore, Open Science and FAIR (Findable, Accessible, Interoperable, and Reusable) principles are main staples of PANGAIA.

Strengthen collaborations

Strengthening the existing collaborations among EU and non-EU groups, while creating new collaborations among the participants both within the EU and beyond its borders.

Generate results

To improve the scientific excellence and international competitiveness of all participants, and to promote their capability to generate results and tools of wider impact on the market.

A pangenome of three SARS-CoV-2 strains
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FUNDING:

This project has received funding from the European Union’s Horizon 2020 Research and Innovation Staff Exchange programme under the Marie Skłodowska-Curie grant agreement No. 872539

Our partners


Logo of the University of Milano-Bicocca
Logo of CWI
Logo of University of Bielefeld
Logo of Pasteur Institute

News & events


Data Analysis in Response to Epidemics (DARE)

14/06/2021

Data Analysis in Response to Epidemics (DARE)

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PANGAIA Seminar Series #4

25/05/2021

PANGAIA Seminar Series #4

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PANGAIA Seminar Series #3

12/04/2021

PANGAIA Seminar Series #3

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DSB 2021

10/02/2021

DSB 2021

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Computational Pangenomics @ CiE 2021

09/12/2020

Computational Pangenomics @ CiE 2021

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PANGAIA Seminar Series #2

20/11/2020

PANGAIA Seminar Series #2

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Bicocca Research

09/11/2020

Bicocca Research

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PANGAIA Seminar Series #1

09/11/2020

PANGAIA Seminar Series #1

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Scalable variant detection in pangenome models @T2T-HPRC 2020 Conference

22/09/2020

Scalable variant detection in pangenome models @T2T-HPRC 2020 Conference

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Computational Pangenomics: Algorithms & Applications @ ECCB 2020

30/06/2020

Computational Pangenomics: Algorithms & Applications @ ECCB 2020

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Our latest tweets


PangaiaProject

- June 14, 2021

The paper "Incomplete Directed Perfect Phylogeny in Linear Time" has been accepted at WADS 2021. https://t.co/Ps0Kodo5do @CORDIS_EU
h J R
PangaiaProject

- May 19, 2021

The first seminar "Sparse regularization for multi-omics data" of @Olissipo_eu will take place tomorrow https://t.co/FHlkQrT1cC
h J R
PangaiaProject

- April 22, 2021

The work "Incomplete Directed Perfect Phylogeny in linear time" by Giulia Bernardini, Paola Bonizzoni and Pawel Gawrychowski has been presented at the event Women in Data Science at CWI Amsterdam. #PANGAIA @CORDIS_EU https://t.co/1Y5f17kuZq
h J R
PangaiaProject

- April 12, 2021

On Monday, April 19, 2021, 11:00 CEST we will host the third PANGAIA seminar on "Investigating the role of somatic copy-number alterations in shaping the landscape of cancer genomes" https://t.co/P8RbC8cn5H
h J R
PangaiaProject

- April 9, 2021

Today at 11:00 am ADT Jouni Sirén (UCSC Genomics Institute) will give a lecture about "VG: Overview, Internals, and Short Read Mapping". https://t.co/Z6WZ2KOdl0
h J R

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